IL_1T0D_001
3D structure
- PDB id
- 1T0D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of 2-aminopurine labelled bacterial decoding site RNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.2 Å
Loop
- Sequence
- G(MTU)AG*CAC
- Length
- 7 nucleotides
- Bulged bases
- 1T0D|1|A|A|9
- QA status
- Modified nucleotides: MTU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1T0D_001 not in the Motif Atlas
- Geometric match to IL_3TD0_005
- Geometric discrepancy: 0.1237
- The information below is about IL_3TD0_005
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_57744.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 22
Unit IDs
1T0D|1|A|G|7
1T0D|1|A|MTU|8
1T0D|1|A|A|9
1T0D|1|A|G|10
*
1T0D|1|B|C|26
1T0D|1|B|A|27
1T0D|1|B|C|28
Current chains
- Chain A
- 5'-R(*GP*GP*UP*GP*GP*UP*GP*(MTU)P*AP*GP*UP*CP*GP*CP*UP*GP*G)-3'
- Chain B
- 5'-R(*CP*AP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*AP*CP*CP*C)-3'
Nearby chains
- Chain D
- 5'-R(*CP*AP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*AP*CP*CP*C)-3'
Coloring options: