IL_1TUT_001

3D structure

PDB id

1TUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

J4/5 Loop from the Candida albicans and Candida dubliniensis Group I Introns

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GAAG*UAAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1TUT_001 not in the Motif Atlas

Geometric match to IL_4LFB_060

Geometric discrepancy: 0.1714

The information below is about IL_4LFB_060

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.3

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

47

Unit IDs

1TUT|1|A|G|4
1TUT|1|A|A|5
1TUT|1|A|A|6
1TUT|1|A|G|7
*
1TUT|1|B|U|15
1TUT|1|B|A|16
1TUT|1|B|A|17
1TUT|1|B|U|18

Current chains

Chain A

5'-R(*GP*AP*GP*GP*AP*AP*GP*GP*CP*GP*A)-3'

Chain B

5'-R(*UP*CP*GP*UP*UP*AP*AP*UP*CP*UP*C)-3'

Nearby chains