IL_1U63_003

3D structure

PDB id

1U63 (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE STRUCTURE OF A RIBOSOMAL PROTEIN L1-mRNA COMPLEX

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGAG*CGAGAAAC

Length

12 nucleotides

Bulged bases

1U63|1|D|G|36

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_24134.1

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

1U63|1|D|G|10
1U63|1|D|G|11
1U63|1|D|A|12
1U63|1|D|G|13
*
1U63|1|D|C|33
1U63|1|D|G|34
1U63|1|D|A|35
1U63|1|D|G|36
1U63|1|D|A|37
1U63|1|D|A|38
1U63|1|D|A|39
1U63|1|D|C|40

Current chains

Chain D

49 NT FRAGMENT OF MRNA FOR L1

Nearby chains

Chain A

50S ribosomal protein L1P

Chain B

49 NT FRAGMENT OF MRNA FOR L1

Chain C

50S ribosomal protein L1P