Motif IL_24134.1 Version IL_24134.1 of this group appears in releases 3.89 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 1-7 | 1-12 | 2-11 | 7-10 | 7-12 | 8-9 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2HW8_001 | 2HW8 | 0.0876 | 0 | Kink-turn | B | 36-MER | C | 22 | G | 23 | C | 24 | G | 25 | A | 26 | A | 27 | A | 28 | C | 29 | * | G | 10 | G | 11 | A | 12 | G | 13 | ncsS | cWW | ntsS | tHS | tSs | cWW |
| 2 | IL_2VPL_001 | 2VPL | 0.0000 | 0 | Kink-turn | B | FRAGMENT OF MRNA FOR L1-OPERON CONTAINING REGULATOR L1-BINDING SITE | C | 33 | G | 34 | A | 35 | G | 36 | A | 37 | A | 38 | A | 39 | C | 40 | * | G | 10 | G | 11 | A | 12 | G | 13 | cWW | ntsS | tHS | tSs | cWW | |
| 3 | IL_1U63_003 | 1U63 | 0.3178 | 0 | Kink-turn | D | 49 NT FRAGMENT OF MRNA FOR L1 | C | 33 | G | 34 | A | 35 | G | 36 | A | 37 | A | 38 | A | 39 | C | 40 | * | G | 10 | G | 11 | A | 12 | G | 13 | cWW | ntsS | tHS | tSs | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAGAAAC*GGAG | 2 |
| CGCGAAAC*GGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAGAAA*GA | 2 |
| GCGAAA*GA | 1 |
Release history
| Release | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-10-09 | 2024-11-06 | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 | 2025-05-21 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Kink-turn (3)
- Basepair signature
- cWW-tSS-L-R-L-tHS-L-cWW-L-L
- Heat map statistics
- Min 0.09 | Avg 0.16 | Max 0.33
Coloring options: