IL_1U6P_063

3D structure

PDB id

1U6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMR Structure of the MLV encapsidation signal bound to the Nucleocapsid protein

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GU(AP7)C*GCUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: AP7

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1U6P_063 not in the Motif Atlas

Geometric match to IL_1L9A_005

Geometric discrepancy: 0.3211

The information below is about IL_1L9A_005

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

1U6P|16|B|G|280
1U6P|16|B|U|281
1U6P|16|B|AP7|282
1U6P|16|B|C|283
*
1U6P|16|B|G|298
1U6P|16|B|C|299
1U6P|16|B|U|300
1U6P|16|B|C|301

Current chains

Chain B

101-MER

Nearby chains

Chain A

Gag polyprotein