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Motif IL_85033.2 Version IL_85033.2 of this group appears in releases 3.96 to 3.97

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 6 7 81-82-73-64-5
1 IL_6JDV_0026JDV0.30200Tandem non-canonical cWW pairsBsgRNAA63C64C65G66*C35C36U37U38cWWcWWcWW
2 IL_5UNE_0055UNE0.41610tSH-tHWB+ARNA (47-MER)G21C22A23C24*G21C22A23C24cWWntWHncWScWW
3 IL_8CRE_0188CRE0.30520Tandem non-canonical cWW pairs (H)1 LSU rRNAA445U446U447U448*G481U482U483U484cWWncWwcWW
4 IL_3WBM_0033WBM0.17530Tandem non-canonical cWW pairsX+YRNA (25-MER)G14A15C16U17*A10C11C12C13cWWcWWncBWcWW
5 IL_3WBM_0023WBM0.18620Tandem non-canonical cWW pairsY+XRNA (25-MER)G14A15C16U17*A10C11C12C13cWWncWWncBWcWW
6 IL_1D4R_0011D4R0.00000Tandem non-canonical cWW pairsA+B29-MER OF MODIFIED SRP RNA HELIX 6G4A5C6C7*G22A23C24C25cWWcWWcWWacWW
7 IL_1JID_0021JID0.16450Tandem non-canonical cWW pairsBHELIX 6 OF HUMAN SRP RNAG138A139C140C141*G156A157C158C159cWWcWWcWWcWW
8 IL_1D4R_0031D4R0.18870Tandem non-canonical cWW pairsA+B29-MER OF MODIFIED SRP RNA HELIX 6G22A23C24C25*G4A5C6C7cWWcWWcWWcWW
9 IL_1MFQ_0041MFQ0.20900Tandem non-canonical cWW pairsA SRP RNAG156A157C158C159*G138A139C140C141cWWncWWncWWcWW
10 IL_7VYX_0027VYX0.26290CsgRNAC13U14U15C16*G50G51U52G53ncWWncWwncWWacWW
11 IL_5EW4_0025EW40.21760Tandem non-canonical cWW pairsB+ARNA (22-mer)C8C9C10G11*C14C15C16G17cWWncBWncBWcWW
12 IL_8FER_0018FER0.23830AAA+BBBRNA 16mer with two continuous s(2)UG7SUR8SUR9C10*G7SUR8SUR9C10cWWcWwcWwcWW
13 IL_4K27_0014K270.23570Tandem non-canonical cWW pairsUMyotonic Dystrophy Type 2 RNAC4C5U6G7*C49C50U51G52cWWcWWcWWcWW
14 IL_1L9A_0051L9A0.22300Tandem non-canonical cWW pairsBsignal recognition particle RNA S domainG138A139C140C141*G156A157C158C159cWWncWWncWWacWW
15 IL_8P9A_4198P9A0.28520Tandem non-canonical cWW pairs (H)sR SSU rRNAG953G954A955C956*G871G872U873C874cWWcWWcWW
16 IL_8CRE_4338CRE0.29610Tandem non-canonical cWW pairs (H)CM SSU rRNAG938G939A940C941*G856G857U858C859cWWcWWcWW
17 IL_8P9A_4218P9A0.41030Tandem non-canonical cWW pairs (H)sR SSU rRNAA924G925A926C927*G885U886A887U888cWWcWWcWW
18 IL_8CRE_4358CRE0.42160Tandem non-canonical cWW pairs (H)CM SSU rRNAA909G910A911C912*G870U871A872U873cWWcWWcWW
19 IL_3CJZ_0013CJZ0.38840Tandem non-canonical cWW pairsA+BRNA (13-mer)G5M2G6A7C8*G18M2G19A20C21cWWcWWcWWcWW
20 IL_5LQO_0025LQO0.37000Tandem non-canonical cWW pairsA+BRNA (10-mer)G4G5A6C7*G4G5A6C7cWWcWWcWWcWW
21 IL_5LQT_0025LQT0.31890Tandem non-canonical cWW pairsB+ARNA (10-mer)G4G56MZ6C7*G4G56MZ6C7cWWcWWcWWcWW
22 IL_333D_001333D0.32500Tandem non-canonical cWW pairsARNA (8-mer)C3A4I5G6*C3||||11_655A4||||11_655I5||||11_655G6||||11_655cWWcWWcWWcWW
23 IL_8P9A_4268P9A0.40060Tandem non-canonical cWW pairs (H)sR SSU rRNAG1074C1075A1076C1077*G1041G1042A1043U1044cWWncBWcWWcWW
24 IL_8CRE_4408CRE0.38040Tandem non-canonical cWW pairs (H)CM SSU rRNAG1059C1060A1061C1062*G1026G1027A1028U1029cWWncBWcWWcWW
25 IL_5J7L_2835J7L0.36010Tandem non-canonical cWW pairsDA LSU rRNAG1038A1039A1040G1041*C1114G1115G1116C1117cWWcWWcWWcWW
26 IL_8CRE_1098CRE0.37940Tandem non-canonical cWW pairs (H)1 LSU rRNAU2707A2708C2709A2710*U2690U2691G2692A2693cWWcWWcWW
27 IL_8P9A_3278P9A0.39320Tandem non-canonical cWW pairs (H)AR LSU rRNAU2735A2736C2737A2738*U2718U2719G2720A2721cWWcWWcWW
28 IL_7R9G_0027R9G0.32940Tandem non-canonical cWW pairsBRNA (18-mer)C5G6G7G8*C5||||2_555G6||||2_555G7||||2_555G8||||2_555ncWWncWW
29 IL_8P9A_4208P9A0.48281Tandem non-canonical cWW pairs (H)sR SSU rRNAC874G875G877G878*C950A951A952G953cWWcWWcWWcWW
30 IL_8CRE_4348CRE0.45791Tandem non-canonical cWW pairs (H)CM SSU rRNAC859G860G862G863*C935A936A937G938cWWcWWcWWcWW
31 IL_5J7L_0335J7L0.42781Tandem non-canonical cWW pairsAA SSU rRNAU740G741G742A743*U662A663G664G666cWWcWwcWWcWW
32 IL_4LFB_0294LFB0.43101Tandem non-canonical cWW pairsA SSU rRNAU740G741G742U743*G662A663G664G666cWWcWwcWWcWW
33 IL_1G1X_0061G1X0.44651Tandem non-canonical cWW pairsJ+I16S RIBOSOMAL RNAU740G741G742U743*G662A663G664G666cWWcWwcWWcWW
34 IL_1G1X_0031G1X0.45401Tandem non-canonical cWW pairsE+D16S RIBOSOMAL RNAU740G741G742U743*G662A663G664G666cWWcWwcWWcWW
35 IL_1KUQ_0031KUQ0.60171Tandem non-canonical cWW pairsB16S RIBOSOMAL RNA FRAGMENTU39G40G41U42*G26A27||AG28||AG30cWWcWwncWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GACC*GACC5
UGGU*GAGAG4
GACU*ACCC2
GGAC*GGUC2
AGAC*GUAU2
GCAC*GGAU2
UACA*UUGA2
CGGGG*CAAG2
ACCG*CCUU1
GCAC*GCAC1
AUUU*GUUU1
CUUC*GGUG1
CCCG*CCCG1
G(SUR)(SUR)C*G(SUR)(SUR)C1
CCUG*CCUG1
GAC*GAC1
GGAC*GGAC1
GG(6MZ)C*GG(6MZ)C1
CA(I)G*CA(I)G1
GAAG*CGGC1
CGGG*CGGG1
UGGA*UAGAG1
Non-Watson-Crick part of the motif
SequenceCounts
AC*AC5
GG*AGA5
AC*CC2
GA*GU2
GA*UA2
CA*GA2
AC*UG2
GGG*AA2
CC*CU1
CA*CA1
UU*UU1
UU*GU1
CC*CC1
(SUR)(SUR)*(SUR)(SUR)1
CU*CU1
(M2G)A*(M2G)A1
GA*GA1
G(6MZ)*G(6MZ)1
A(I)*A(I)1
AA*GG1
GG*GG1

Release history

Release3.963.97
Date2025-04-232025-05-21
StatusUpdated, 2 parentsExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Tandem non-canonical cWW pairs (21)
  • Tandem non-canonical cWW pairs (H) (11)
  • (2)
  • tSH-tHW (1)
    • Basepair signature
    cWW-cWW-cWW-cWW
    Heat map statistics
    Min 0.05 | Avg 0.39 | Max 0.86
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