IL_1ULL_010

3D structure

PDB id

1ULL (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNA APTAMER COMPLEXED WITH HIV-1 REV PEPTIDE, NMR, 7 STRUCTURES

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

UAC*GUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UAC,GUA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1ULL_010 not in the Motif Atlas

Geometric match to IL_5TBW_016

Geometric discrepancy: 0.2549

The information below is about IL_5TBW_016

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

1ULL|4|A|U|12
1ULL|4|A|A|13
1ULL|4|A|C|14
*
1ULL|4|A|G|19
1ULL|4|A|U|20
1ULL|4|A|A|21

Current chains

Chain A

RNA (5'-R (GP*GP*CP*UP*GP*GP*AP*CP*UP*CP*GP*UP*AP*CP*UP*UP*CP*GP* GP*UP*AP*CP*UP*GP*GP*AP*GP*AP*AP*AP*CP*AP*GP*CP*C)-3')

Nearby chains

Chain B

REV PEPTIDE