1ULL Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_1ULL_001 | 1/A/14:19 | UNCG | geometric HL_4PMI_004 HL_61337.5 | |
| HL_1ULL_002 | 2/A/14:19 | UNCG variation | geometric HL_2NUE_001 HL_91813.1 | |
| HL_1ULL_003 | 3/A/14:19 | No text annotation | geometric HL_5TBW_075 NA | |
| HL_1ULL_004 | 4/A/14:19 | UNCG variation | geometric HL_2NUE_001 HL_91813.1 | |
| HL_1ULL_005 | 5/A/14:19 | UNCG variation | geometric HL_6VMY_004 HL_61337.5 | |
| HL_1ULL_006 | 6/A/14:19 | UNCG | geometric HL_1I6U_001 HL_61337.5 | |
| HL_1ULL_007 | 7/A/14:19 | UNCG variation | geometric HL_6VMY_004 HL_61337.5 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_1ULL_002 | 1/A/5:8, 1/A/27:31 | tWW and near cWH | geometric IL_6DLR_005 IL_45860.1 | |
| IL_1ULL_003 | 1/A/10:11, 1/A/22:25 | Major groove intercalation | geometric IL_5J7L_315 NA | |
| IL_1ULL_004 | 2/A/5:8, 2/A/27:31 | tWW and near cWH | geometric IL_6DLR_005 IL_45860.1 | |
| IL_1ULL_005 | 2/A/10:11, 2/A/22:25 | Major groove intercalation | geometric IL_4V9F_067 IL_71421.4 | |
| IL_1ULL_006 | 3/A/5:8, 3/A/27:31 | tWW and near cWH | geometric IL_6DLR_005 IL_45860.1 | |
| IL_1ULL_007 | 3/A/10:11, 3/A/22:25 | Major groove intercalation | geometric IL_5J7L_315 NA | |
| IL_1ULL_008 | 4/A/5:8, 4/A/27:31 | tWW and near cWH | geometric IL_6DLR_005 IL_45860.1 | |
| IL_1ULL_009 | 4/A/10:11, 4/A/22:25 | Multiple bulged bases | geometric IL_6DLR_004 IL_77710.2 | |
| IL_1ULL_011 | 5/A/5:8, 5/A/27:31 | Non canonical cWW and near pair | geometric IL_6CF2_001 IL_28284.1 | |
| IL_1ULL_012 | 5/A/10:11, 5/A/22:25 | Major groove intercalation | geometric IL_5J7L_315 NA | |
| IL_1ULL_013 | 6/A/5:8, 6/A/27:31 | tWW and non-canonical cWW | geometric IL_4PMI_008 IL_28284.1 | |
| IL_1ULL_014 | 6/A/10:11, 6/A/22:25 | Stack outside cWW | geometric IL_5WT1_001 IL_77710.2 | |
| IL_1ULL_015 | 7/A/5:8, 7/A/27:31 | Tandem non-canonical cWW pairs | geometric IL_5J7L_296 NA | |
| IL_1ULL_016 | 7/A/10:11, 7/A/22:25 | Major groove intercalation | geometric IL_5J7L_315 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_1ULL_001 | No text annotation | ||
| IL_1ULL_010 | Isolated non-canonical cWW pair |
Valid loops
No loops found
Problematic loops
No problematic loops
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