IL_1VBZ_001

3D structure

PDB id

1VBZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in Ba2+ solution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAUGGUCCCAG*CG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VBZ_001 not in the Motif Atlas

Geometric match to IL_4PR6_001

Geometric discrepancy: 0.1899

The information below is about IL_4PR6_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93657.1

Basepair signature

cWW-L-cWW-L-L-R-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

1VBZ|1|B|C|107
1VBZ|1|B|A|108
1VBZ|1|B|U|109
1VBZ|1|B|G|110
1VBZ|1|B|G|111
1VBZ|1|B|U|112
1VBZ|1|B|C|113
1VBZ|1|B|C|114
1VBZ|1|B|C|115
1VBZ|1|B|A|116
1VBZ|1|B|G|117
*
1VBZ|1|B|C|130
1VBZ|1|B|G|131

Current chains

Chain B

Hepatitis Delta virus ribozyme

Nearby chains