IL_1VC5_001

3D structure

PDB id

1VC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Wild Type Hepatitis Delta Virus Gemonic Ribozyme Precursor, in EDTA solution

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAUGGUCCCAG*CG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VC5_001 not in the Motif Atlas

Geometric match to IL_4PR6_001

Geometric discrepancy: 0.2372

The information below is about IL_4PR6_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93657.1

Basepair signature

cWW-L-cWW-L-L-R-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

1VC5|1|B|C|107
1VC5|1|B|A|108
1VC5|1|B|U|109
1VC5|1|B|G|110
1VC5|1|B|G|111
1VC5|1|B|U|112
1VC5|1|B|C|113
1VC5|1|B|C|114
1VC5|1|B|C|115
1VC5|1|B|A|116
1VC5|1|B|G|117
*
1VC5|1|B|C|130
1VC5|1|B|G|131

Current chains

Chain B

Hepatitis Delta virus ribozyme

Nearby chains