IL_1VC6_001

3D structure

PDB id

1VC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Product with C75U Mutaion, cleaved in Imidazole and Mg2+ solutions

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAUGGUCCCAG*CG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VC6_001 not in the Motif Atlas

Geometric match to IL_4PR6_001

Geometric discrepancy: 0.1704

The information below is about IL_4PR6_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15218.1

Basepair signature

cWW-L-cWW-L-L-R-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

1VC6|1|B|C|107
1VC6|1|B|A|108
1VC6|1|B|U|109
1VC6|1|B|G|110
1VC6|1|B|G|111
1VC6|1|B|U|112
1VC6|1|B|C|113
1VC6|1|B|C|114
1VC6|1|B|C|115
1VC6|1|B|A|116
1VC6|1|B|G|117
*
1VC6|1|B|C|130
1VC6|1|B|G|131

Current chains

Chain B

Hepatitis Delta virus ribozyme

Nearby chains