IL_1VQ5_013

3D structure

PDB id

1VQ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'RAA' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CCGACCG*CCAGUACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQ5_013 not in the Motif Atlas

Homologous match to IL_4V9F_012

Geometric discrepancy: 0.0441

The information below is about IL_4V9F_012

Detailed Annotation

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_59724.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

Number of instances in this motif group

1

Unit IDs

1VQ5|1|0|C|290
1VQ5|1|0|C|291
1VQ5|1|0|G|292
1VQ5|1|0|A|293
1VQ5|1|0|C|294
1VQ5|1|0|C|295
1VQ5|1|0|G|296
*
1VQ5|1|0|C|355
1VQ5|1|0|C|356
1VQ5|1|0|A|357
1VQ5|1|0|G|358
1VQ5|1|0|U|359
1VQ5|1|0|A|360
1VQ5|1|0|C|361
1VQ5|1|0|G|362

Current chains

Chain 0

23S ribosomal rna

Nearby chains