IL_1VQ5_090

3D structure

PDB id

1VQ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'RAA' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

AUAGUAC*GGAACU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQ5_090 not in the Motif Atlas

Homologous match to IL_4V9F_092

Geometric discrepancy: 0.0391

The information below is about IL_4V9F_092

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

1VQ5|1|0|A|2689
1VQ5|1|0|U|2690
1VQ5|1|0|A|2691
1VQ5|1|0|G|2692
1VQ5|1|0|U|2693
1VQ5|1|0|A|2694
1VQ5|1|0|C|2695
*
1VQ5|1|0|G|2700
1VQ5|1|0|G|2701
1VQ5|1|0|A|2702
1VQ5|1|0|A|2703
1VQ5|1|0|C|2704
1VQ5|1|0|U|2705

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain B

50S ribosomal protein L3P

Chain E

50S ribosomal protein L6P

Chain K

50S ribosomal protein L14P