IL_1VQ6_073
3D structure
- PDB id
- 1VQ6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of c-hpmn and CCA-PHE-CAP-BIO bound to the large ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- AAG*CUAU
- Length
- 7 nucleotides
- Bulged bases
- 1VQ6|1|0|A|2096, 1VQ6|1|0|U|2648, 1VQ6|1|0|A|2649
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VQ6_073 not in the Motif Atlas
- Homologous match to IL_4V9F_073
- Geometric discrepancy: 0.0448
- The information below is about IL_4V9F_073
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_80025.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
1VQ6|1|0|A|2095
1VQ6|1|0|A|2096
1VQ6|1|0|G|2097
*
1VQ6|1|0|C|2647
1VQ6|1|0|U|2648
1VQ6|1|0|A|2649
1VQ6|1|0|U|2650
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain 5
- 5'-R(*CP*CP*AP*(PHE)*(ACA)*(BTN))-3'
- Chain B
- 50S ribosomal protein L3P
- Chain R
- 50S ribosomal protein L22P
Coloring options: