IL_1VQ7_071

3D structure

PDB id

1VQ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'DCA' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CGUAGUACCUUG*CUUG

Length

16 nucleotides

Bulged bases

1VQ7|1|0|G|1979, 1VQ7|1|0|U|1985, 1VQ7|1|0|U|2004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQ7_071 not in the Motif Atlas

Homologous match to IL_4V9F_071

Geometric discrepancy: 0.0346

The information below is about IL_4V9F_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

1VQ7|1|0|C|1975
1VQ7|1|0|G|1976
1VQ7|1|0|U|1977
1VQ7|1|0|A|1978
1VQ7|1|0|G|1979
1VQ7|1|0|U|1980
1VQ7|1|0|A|1981
1VQ7|1|0|C|1982
1VQ7|1|0|C|1983
1VQ7|1|0|U|1984
1VQ7|1|0|U|1985
1VQ7|1|0|G|1986
*
1VQ7|1|0|C|2002
1VQ7|1|0|U|2003
1VQ7|1|0|U|2004
1VQ7|1|0|G|2005

Current chains

Chain 0

23S ribosomal rna

Nearby chains