IL_1VQ7_090

3D structure

PDB id

1VQ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'DCA' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CUGAC*GGAAAAGAG

Length

14 nucleotides

Bulged bases

1VQ7|1|0|G|2815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQ7_090 not in the Motif Atlas

Geometric match to IL_4WF9_099

Geometric discrepancy: 0.2619

The information below is about IL_4WF9_099

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

1VQ7|1|0|C|2672
1VQ7|1|0|U|2673
1VQ7|1|0|G|2674
1VQ7|1|0|A|2675
1VQ7|1|0|C|2676
*
1VQ7|1|0|G|2809
1VQ7|1|0|G|2810
1VQ7|1|0|A|2811
1VQ7|1|0|A|2812
1VQ7|1|0|A|2813
1VQ7|1|0|A|2814
1VQ7|1|0|G|2815
1VQ7|1|0|A|2816
1VQ7|1|0|G|2817

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain B

50S ribosomal protein L3P

Chain J

50S ribosomal protein L13P