IL_1VQ7_095

3D structure

PDB id

1VQ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'DCA' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GGUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

1VQ7|1|0|A|2800

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQ7_095 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.172

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

1VQ7|1|0|G|2772
1VQ7|1|0|G|2773
1VQ7|1|0|U|2774
1VQ7|1|0|A|2775
1VQ7|1|0|A|2776
1VQ7|1|0|G|2777
*
1VQ7|1|0|C|2797
1VQ7|1|0|G|2798
1VQ7|1|0|A|2799
1VQ7|1|0|A|2800
1VQ7|1|0|A|2801
1VQ7|1|0|C|2802

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain E

50S ribosomal protein L6P

Chain J

50S ribosomal protein L13P