IL_1VQ7_102

3D structure

PDB id

1VQ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'DCA' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CC*GAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQ7_102 not in the Motif Atlas

Homologous match to IL_4V9F_103

Geometric discrepancy: 0.0549

The information below is about IL_4V9F_103

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

18

Unit IDs

1VQ7|1|9|C|3029
1VQ7|1|9|C|3030
*
1VQ7|1|9|G|3050
1VQ7|1|9|A|3051
1VQ7|1|9|A|3052
1VQ7|1|9|G|3053

Current chains

Chain 9

5S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L5P

Chain N

50S ribosomal protein L18P