IL_1VQ8_058

3D structure

PDB id

1VQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCDA-PHE-CAP-BIO and the antibiotic sparsomycin bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.2 Å

Loop

Sequence

CCAACU*ACGAACG

Length

13 nucleotides

Bulged bases

1VQ8|1|0|C|1617

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQ8_058 not in the Motif Atlas

Homologous match to IL_4V9F_057

Geometric discrepancy: 0.0427

The information below is about IL_4V9F_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34822.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

1VQ8|1|0|C|1578
1VQ8|1|0|C|1579
1VQ8|1|0|A|1580
1VQ8|1|0|A|1581
1VQ8|1|0|C|1582
1VQ8|1|0|U|1583
*
1VQ8|1|0|A|1612
1VQ8|1|0|C|1613
1VQ8|1|0|G|1614
1VQ8|1|0|A|1615
1VQ8|1|0|A|1616
1VQ8|1|0|C|1617
1VQ8|1|0|G|1618

Current chains

Chain 0

23S ribosomal rna

Nearby chains