IL_1VQ8_070
3D structure
- PDB id
- 1VQ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of CCDA-PHE-CAP-BIO and the antibiotic sparsomycin bound to the large ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.2 Å
Loop
- Sequence
- UGAACAC*GACGAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VQ8_070 not in the Motif Atlas
- Homologous match to IL_4V9F_069
- Geometric discrepancy: 0.1119
- The information below is about IL_4V9F_069
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65359.1
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
1VQ8|1|0|U|1907
1VQ8|1|0|G|1908
1VQ8|1|0|A|1909
1VQ8|1|0|A|1910
1VQ8|1|0|C|1911
1VQ8|1|0|A|1912
1VQ8|1|0|C|1913
*
1VQ8|1|0|G|1926
1VQ8|1|0|A|1927
1VQ8|1|0|C|1928
1VQ8|1|0|G|1929
1VQ8|1|0|A|1930
1VQ8|1|0|A|1931
1VQ8|1|0|G|1932
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain 3
- 50S ribosomal protein L44E
- Chain A
- 50S ribosomal protein L2P
- Chain M
- 50S Ribosomal Protein L15E
Coloring options: