IL_1VQ9_041

3D structure

PDB id

1VQ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCA-PHE-CAP-BIO and the antibiotic sparsomycin bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UUAAGUG*CUCAAA

Length

13 nucleotides

Bulged bases

1VQ9|1|0|C|1245, 1VQ9|1|0|A|1247

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQ9_041 not in the Motif Atlas

Homologous match to IL_4V9F_040

Geometric discrepancy: 0.1413

The information below is about IL_4V9F_040

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

1VQ9|1|0|U|1115
1VQ9|1|0|U|1116
1VQ9|1|0|A|1117
1VQ9|1|0|A|1118
1VQ9|1|0|G|1119
1VQ9|1|0|U|1120
1VQ9|1|0|G|1121
*
1VQ9|1|0|C|1243
1VQ9|1|0|U|1244
1VQ9|1|0|C|1245
1VQ9|1|0|A|1246
1VQ9|1|0|A|1247
1VQ9|1|0|A|1248

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain E

50S ribosomal protein L6P

Chain J

50S ribosomal protein L13P