IL_1VQ9_097

3D structure

PDB id

1VQ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCA-PHE-CAP-BIO and the antibiotic sparsomycin bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UGUGCG*UUAAG

Length

11 nucleotides

Bulged bases

1VQ9|1|0|A|2890

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQ9_097 not in the Motif Atlas

Homologous match to IL_4V9F_099

Geometric discrepancy: 0.0509

The information below is about IL_4V9F_099

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_48489.1

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

8

Unit IDs

1VQ9|1|0|U|2864
1VQ9|1|0|G|2865
1VQ9|1|0|U|2866
1VQ9|1|0|G|2867
1VQ9|1|0|C|2868
1VQ9|1|0|G|2869
*
1VQ9|1|0|U|2888
1VQ9|1|0|U|2889
1VQ9|1|0|A|2890
1VQ9|1|0|A|2891
1VQ9|1|0|G|2892

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain B

50S ribosomal protein L3P

Chain U

50S ribosomal protein L24E