IL_1VQ9_106
3D structure
- PDB id
- 1VQ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of CCA-PHE-CAP-BIO and the antibiotic sparsomycin bound to the large ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- CCGAG*CGUUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 1VQ9|1|0|U|1029, 1VQ9|1|0|U|1030
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VQ9_106 not in the Motif Atlas
- Homologous match to IL_4V9F_031
- Geometric discrepancy: 0.0676
- The information below is about IL_4V9F_031
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_94910.1
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
1VQ9|1|0|C|936
1VQ9|1|0|C|937
1VQ9|1|0|G|938
1VQ9|1|0|A|939
1VQ9|1|0|G|940
*
1VQ9|1|0|C|1026
1VQ9|1|0|G|1027
1VQ9|1|0|U|1028
1VQ9|1|0|U|1029
1VQ9|1|0|U|1030
1VQ9|1|0|G|1031
1VQ9|1|0|A|1032
1VQ9|1|0|C|1033
1VQ9|1|0|G|1034
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain O
- 50S ribosomal protein L18e
- Chain Q
- 50S ribosomal protein L21e
- Chain W
- 50S ribosomal protein L30P
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