IL_1VQK_004

3D structure

PDB id

1VQK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCDA-PHE-CAP-BIO bound to the a site of the ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

GGGAG*CGAAGAAC

Length

13 nucleotides

Bulged bases

1VQK|1|0|A|96

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQK_004 not in the Motif Atlas

Homologous match to IL_4V9F_004

Geometric discrepancy: 0.0333

The information below is about IL_4V9F_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_71972.1

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

11

Unit IDs

1VQK|1|0|G|77
1VQK|1|0|G|78
1VQK|1|0|G|79
1VQK|1|0|A|80
1VQK|1|0|G|81
*
1VQK|1|0|C|93
1VQK|1|0|G|94
1VQK|1|0|A|95
1VQK|1|0|A|96
1VQK|1|0|G|97
1VQK|1|0|A|98
1VQK|1|0|A|99
1VQK|1|0|C|100

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain T

50S ribosomal protein L24P

Chain V

50S ribosomal protein L29P