Motif IL_71972.1 Version IL_71972.1 of this group appears in releases 4.1 to 4.1
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 1-5 | 1-12 | 2-11 | 4-11 | 5-10 | 5-12 | 6-9 | 7-8 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_6UFH_001 | 6UFH | 0.2157 | 1 | Kink-turn | A | RNA (167-MER) | C | 3 | A | 4 | U | 5 | G | 7 | A | 8 | U | 9 | C | 10 | * | G | 23 | G | 24 | G | 25 | A | 26 | G | 27 | ncsS | cWW | ntsS | tSH | tHS | cWW | ||
| 2 | IL_4GXY_005 | 4GXY | 0.1621 | 1 | Kink-turn | A | Adenosylcobalamin riboswitch | C | 139 | G | 140 | A | 141 | G | 143 | A | 144 | U | 145 | C | 146 | * | G | 82 | G | 83 | G | 84 | A | 85 | G | 86 | ncsS | cWW | ntsS | tSH | tHS | cWW | ||
| 3 | IL_6UFM_001 | 6UFM | 0.0000 | 1 | Kink-turn | B | RNA (98-MER) | C | 3 | G | 4 | A | 5 | G | 7 | A | 8 | U | 9 | C | 10 | * | G | 23 | G | 24 | G | 25 | A | 26 | G | 27 | cWW | tsS | tSH | tHS | cWW | |||
| 4 | IL_6UFG_001 | 6UFG | 0.0999 | 1 | Kink-turn | A | RNA (166-MER) | C | 3 | A | 4 | U | 5 | G | 7 | A | 8 | U | 9 | C | 10 | * | G | 23 | G | 24 | G | 25 | A | 26 | G | 27 | cWW | ntsS | tSH | tHS | cWW | |||
| 5 | IL_9DFE_004 | 9DFE | 0.1288 | 1 | Kink-turn | 1A | LSU rRNA | C | 97 | G | 98 | U | 99 | G | 102 | A | 103 | U | 104 | C | 105 | * | G | 81 | G | 82 | G | 83 | A | 84 | G | 85 | cWW | tsS | tSH | ntHS | tHS | cWW | ||
| 6 | IL_4WF9_004 | 4WF9 | 0.1997 | 1 | Kink-turn | X | LSU rRNA | C | 97 | U | 98 | U | 99 | G | 101 | A | 102 | U | 103 | C | 104 | * | G | 81 | G | 82 | G | 83 | A | 84 | G | 85 | cWW | ntsS | ntSH | ntSs | tHS | cWW | ||
| 7 | IL_9L6Y_001 | 9L6Y | 0.2104 | 1 | Kink-turn | B | CS2 RNA | C | 21 | C | 22 | A | 23 | G | 25 | A | 26 | C | 27 | G | 28 | * | C | 6 | A | 7 | G | 8 | A | 9 | G | 10 | csS | cWW | ntsS | ntSH | ncWWa | cWW | ||
| 8 | IL_8GLP_240 | 8GLP | 0.1886 | 1 | Kink-turn (H) | S2 | SSU rRNA | C | 967 | U | 968 | U | 969 | G | 971 | A | 972 | C | 973 | C | 974 | * | G | 952 | C | 953 | U | 954 | A | 955 | G | 956 | ncsS | cWW | ntSH | ntHS | cWW | |||
| 9 | IL_8B0X_034 | 8B0X | 0.2261 | 1 | Kink-turn (H) | A | SSU rRNA | C | 699 | G | 700 | U | 701 | G | 703 | A | 704 | G | 705 | A | 706 | * | U | 684 | G | 685 | U | 686 | A | 687 | G | 688 | cWW | ntsS | tSH | tHW | tSs | tHS | cWW | |
| 10 | IL_9E6Q_004 | 9E6Q | 0.2592 | 1 | Kink-turn (H) | 1 | LSU rRNA | C | 89 | U | 90 | U | 91 | G | 93 | A | 94 | A | 95 | C | 96 | * | G | 73 | G | 74 | U | 75 | A | 76 | G | 77 | cWW | tSH | tHW | tHS | cWW | |||
| 11 | IL_4V9F_004 | 4V9F | 0.2617 | 1 | Kink-turn | 0 | LSU rRNA | C | 93 | G | 94 | A | 95 | G | 97 | A | 98 | A | 99 | C | 100 | * | G | 77 | G | 78 | G | 79 | A | 80 | G | 81 | cWW | ntsS | tSH | ntHS | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAUCGAUC*GGGAG | 2 |
| CGAGGAUC*GGGAG | 1 |
| CGACGAUC*GGGAG | 1 |
| CGUGGAUC*GGGAG | 1 |
| CUUUGAUC*GGGAG | 1 |
| CCAUGACG*CAGAG | 1 |
| CUUGGACC*GCUAG | 1 |
| CGUAGAGA*UGUAG | 1 |
| CUUAGAAC*GGUAG | 1 |
| CGAAGAAC*GGGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUCGAU*GGA | 2 |
| GAGGAU*GGA | 1 |
| GACGAU*GGA | 1 |
| GUGGAU*GGA | 1 |
| UUUGAU*GGA | 1 |
| CAUGAC*AGA | 1 |
| UUGGAC*CUA | 1 |
| GUAGAG*GUA | 1 |
| UUAGAA*GUA | 1 |
| GAAGAA*GGA | 1 |
Release history
| Release | 4.1 |
|---|---|
| Date | 2025-09-10 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Kink-turn (8)
- Kink-turn (H) (3)
- Basepair signature
- cWW-tSS-tSH-L-R-tHS-L-cWW
- Heat map statistics
- Min 0.10 | Avg 0.22 | Max 0.45
Coloring options: