IL_1VQK_020
3D structure
- PDB id
- 1VQK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of CCDA-PHE-CAP-BIO bound to the a site of the ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.3 Å
Loop
- Sequence
- UGACCG*CCAGUAA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VQK_020 not in the Motif Atlas
- Homologous match to IL_4V9F_019
- Geometric discrepancy: 0.0564
- The information below is about IL_4V9F_019
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_16458.6
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
1VQK|1|0|U|567
1VQK|1|0|G|568
1VQK|1|0|A|569
1VQK|1|0|C|570
1VQK|1|0|C|571
1VQK|1|0|G|572
*
1VQK|1|0|C|585
1VQK|1|0|C|586
1VQK|1|0|A|587
1VQK|1|0|G|588
1VQK|1|0|U|589
1VQK|1|0|A|590
1VQK|1|0|A|591
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain W
- 50S ribosomal protein L30P
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