IL_1VQK_036
3D structure
- PDB id
- 1VQK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of CCDA-PHE-CAP-BIO bound to the a site of the ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.3 Å
Loop
- Sequence
- GCGACCG*CAAAC
- Length
- 12 nucleotides
- Bulged bases
- 1VQK|1|0|G|960
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VQK_036 not in the Motif Atlas
- Homologous match to IL_4V9F_035
- Geometric discrepancy: 0.0439
- The information below is about IL_4V9F_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38603.1
- Basepair signature
- cWW-cWS-L-R-L-R-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
1VQK|1|0|G|958
1VQK|1|0|C|959
1VQK|1|0|G|960
1VQK|1|0|A|961
1VQK|1|0|C|962
1VQK|1|0|C|963
1VQK|1|0|G|964
*
1VQK|1|0|C|1004
1VQK|1|0|A|1005
1VQK|1|0|A|1006
1VQK|1|0|A|1007
1VQK|1|0|C|1008
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain 9
- 5S ribosomal RNA; 5S rRNA
- Chain H
- 50S RIBOSOMAL PROTEIN L10E
- Chain N
- 50S ribosomal protein L18P
- Chain Q
- 50S ribosomal protein L21e
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