IL_1VQK_057

3D structure

PDB id

1VQK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCDA-PHE-CAP-BIO bound to the a site of the ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

CCAACU*ACGAACG

Length

13 nucleotides

Bulged bases

1VQK|1|0|C|1617

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQK_057 not in the Motif Atlas

Homologous match to IL_4V9F_057

Geometric discrepancy: 0.0403

The information below is about IL_4V9F_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34822.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

1VQK|1|0|C|1578
1VQK|1|0|C|1579
1VQK|1|0|A|1580
1VQK|1|0|A|1581
1VQK|1|0|C|1582
1VQK|1|0|U|1583
*
1VQK|1|0|A|1612
1VQK|1|0|C|1613
1VQK|1|0|G|1614
1VQK|1|0|A|1615
1VQK|1|0|A|1616
1VQK|1|0|C|1617
1VQK|1|0|G|1618

Current chains

Chain 0

23S ribosomal rna

Nearby chains