IL_1VQK_065

3D structure

PDB id

1VQK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCDA-PHE-CAP-BIO bound to the a site of the ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

CGCAAAU*ACUCGUACG

Length

16 nucleotides

Bulged bases

1VQK|1|0|A|1857, 1VQK|1|0|C|1872, 1VQK|1|0|C|1876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQK_065 not in the Motif Atlas

Homologous match to IL_4V9F_065

Geometric discrepancy: 0.0437

The information below is about IL_4V9F_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

1VQK|1|0|C|1854
1VQK|1|0|G|1855
1VQK|1|0|C|1856
1VQK|1|0|A|1857
1VQK|1|0|A|1858
1VQK|1|0|A|1859
1VQK|1|0|U|1860
*
1VQK|1|0|A|1869
1VQK|1|0|C|1870
1VQK|1|0|U|1871
1VQK|1|0|C|1872
1VQK|1|0|G|1873
1VQK|1|0|U|1874
1VQK|1|0|A|1875
1VQK|1|0|C|1876
1VQK|1|0|G|1877

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain A

50S ribosomal protein L2P

Chain Z

50S ribosomal protein L37Ae