IL_1VQK_071

3D structure

PDB id

1VQK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCDA-PHE-CAP-BIO bound to the a site of the ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

CGUAGUACCUUG*CUUG

Length

16 nucleotides

Bulged bases

1VQK|1|0|G|1979, 1VQK|1|0|U|1985, 1VQK|1|0|U|2004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQK_071 not in the Motif Atlas

Homologous match to IL_4V9F_071

Geometric discrepancy: 0.0625

The information below is about IL_4V9F_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

1VQK|1|0|C|1975
1VQK|1|0|G|1976
1VQK|1|0|U|1977
1VQK|1|0|A|1978
1VQK|1|0|G|1979
1VQK|1|0|U|1980
1VQK|1|0|A|1981
1VQK|1|0|C|1982
1VQK|1|0|C|1983
1VQK|1|0|U|1984
1VQK|1|0|U|1985
1VQK|1|0|G|1986
*
1VQK|1|0|C|2002
1VQK|1|0|U|2003
1VQK|1|0|U|2004
1VQK|1|0|G|2005

Current chains

Chain 0

23S ribosomal rna

Nearby chains