IL_1VQK_101
3D structure
- PDB id
- 1VQK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of CCDA-PHE-CAP-BIO bound to the a site of the ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.3 Å
Loop
- Sequence
- GGUUGCCU*AUAAGC
- Length
- 14 nucleotides
- Bulged bases
- 1VQK|1|9|U|3023, 1VQK|1|9|U|3024
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VQK_101 not in the Motif Atlas
- Homologous match to IL_4V9F_102
- Geometric discrepancy: 0.5532
- The information below is about IL_4V9F_102
- Detailed Annotation
- Minor groove platform related
- Broad Annotation
- No text annotation
- Motif group
- IL_67623.1
- Basepair signature
- cWW-tSW-cSW-L-cSW-L-R-L-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
1VQK|1|9|G|3021
1VQK|1|9|G|3022
1VQK|1|9|U|3023
1VQK|1|9|U|3024
1VQK|1|9|G|3025
1VQK|1|9|C|3026
1VQK|1|9|C|3027
1VQK|1|9|U|3028
*
1VQK|1|9|A|3054
1VQK|1|9|U|3055
1VQK|1|9|A|3056
1VQK|1|9|A|3057
1VQK|1|9|G|3058
1VQK|1|9|C|3059
Current chains
- Chain 9
- 5S ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L5P
- Chain N
- 50S ribosomal protein L18P
Coloring options: