IL_1VQK_102

3D structure

PDB id

1VQK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCDA-PHE-CAP-BIO bound to the a site of the ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

CC*GAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQK_102 not in the Motif Atlas

Homologous match to IL_4V9F_103

Geometric discrepancy: 0.0758

The information below is about IL_4V9F_103

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_73108.2

Basepair signature

cWW-cWS-cSH-cWW

Number of instances in this motif group

23

Unit IDs

1VQK|1|9|C|3029
1VQK|1|9|C|3030
*
1VQK|1|9|G|3050
1VQK|1|9|A|3051
1VQK|1|9|A|3052
1VQK|1|9|G|3053

Current chains

Chain 9

5S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L5P

Chain N

50S ribosomal protein L18P