IL_1VQL_055

3D structure

PDB id

1VQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'DCSN' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

GGUCG*UCAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQL_055 not in the Motif Atlas

Homologous match to IL_4V9F_055

Geometric discrepancy: 0.0366

The information below is about IL_4V9F_055

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

1VQL|1|0|G|1542
1VQL|1|0|G|1543
1VQL|1|0|U|1544
1VQL|1|0|C|1545
1VQL|1|0|G|1546
*
1VQL|1|0|U|1639
1VQL|1|0|C|1640
1VQL|1|0|A|1641
1VQL|1|0|A|1642
1VQL|1|0|C|1643

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain P

50S ribosomal protein L19E