IL_1VQL_065
3D structure
- PDB id
- 1VQL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the transition state analogue 'DCSN' bound to the large ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.3 Å
Loop
- Sequence
- CGCAAAU*ACUCGUACG
- Length
- 16 nucleotides
- Bulged bases
- 1VQL|1|0|A|1857, 1VQL|1|0|C|1872, 1VQL|1|0|C|1876
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VQL_065 not in the Motif Atlas
- Homologous match to IL_4V9F_065
- Geometric discrepancy: 0.0613
- The information below is about IL_4V9F_065
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_17069.6
- Basepair signature
- cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
- Number of instances in this motif group
- 5
Unit IDs
1VQL|1|0|C|1854
1VQL|1|0|G|1855
1VQL|1|0|C|1856
1VQL|1|0|A|1857
1VQL|1|0|A|1858
1VQL|1|0|A|1859
1VQL|1|0|U|1860
*
1VQL|1|0|A|1869
1VQL|1|0|C|1870
1VQL|1|0|U|1871
1VQL|1|0|C|1872
1VQL|1|0|G|1873
1VQL|1|0|U|1874
1VQL|1|0|A|1875
1VQL|1|0|C|1876
1VQL|1|0|G|1877
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain A
- 50S ribosomal protein L2P
- Chain Z
- 50S ribosomal protein L37Ae
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