IL_1VQM_043
3D structure
- PDB id
- 1VQM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the transition state analogue 'DAN' bound to the large ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.3 Å
Loop
- Sequence
- CCUAGACAG*CCGAG
- Length
- 14 nucleotides
- Bulged bases
- 1VQM|1|0|A|1150
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VQM_043 not in the Motif Atlas
- Homologous match to IL_4V9F_042
- Geometric discrepancy: 0.0461
- The information below is about IL_4V9F_042
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.3
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
1VQM|1|0|C|1147
1VQM|1|0|C|1148
1VQM|1|0|U|1149
1VQM|1|0|A|1150
1VQM|1|0|G|1151
1VQM|1|0|A|1152
1VQM|1|0|C|1153
1VQM|1|0|A|1154
1VQM|1|0|G|1155
*
1VQM|1|0|C|1212
1VQM|1|0|C|1213
1VQM|1|0|G|1214
1VQM|1|0|A|1215
1VQM|1|0|G|1216
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain E
- 50S ribosomal protein L6P
- Chain G
- ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG
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