IL_1VQM_071

3D structure

PDB id

1VQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'DAN' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

CGUAGUACCUUG*CUUG

Length

16 nucleotides

Bulged bases

1VQM|1|0|G|1979, 1VQM|1|0|U|1985, 1VQM|1|0|U|2004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQM_071 not in the Motif Atlas

Homologous match to IL_4V9F_071

Geometric discrepancy: 0.0771

The information below is about IL_4V9F_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

1VQM|1|0|C|1975
1VQM|1|0|G|1976
1VQM|1|0|U|1977
1VQM|1|0|A|1978
1VQM|1|0|G|1979
1VQM|1|0|U|1980
1VQM|1|0|A|1981
1VQM|1|0|C|1982
1VQM|1|0|C|1983
1VQM|1|0|U|1984
1VQM|1|0|U|1985
1VQM|1|0|G|1986
*
1VQM|1|0|C|2002
1VQM|1|0|U|2003
1VQM|1|0|U|2004
1VQM|1|0|G|2005

Current chains

Chain 0

23S ribosomal rna

Nearby chains