IL_1VQN_039

3D structure

PDB id

1VQN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CC-HPMN AND CCA-PHE-CAP-BIO bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UCCCCAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQN_039 not in the Motif Atlas

Geometric match to IL_4V9F_038

Geometric discrepancy: 0.0723

The information below is about IL_4V9F_038

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

1VQN|1|0|U|1101
1VQN|1|0|C|1102
1VQN|1|0|C|1103
1VQN|1|0|C|1104
1VQN|1|0|C|1105
1VQN|1|0|A|1106
1VQN|1|0|A|1107
1VQN|1|0|G|1108
*
1VQN|1|0|C|1254
1VQN|1|0|A|1255

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain J

50S ribosomal protein L13P

Chain W

50S ribosomal protein L30P