IL_1VQN_044

3D structure

PDB id

1VQN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CC-HPMN AND CCA-PHE-CAP-BIO bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GUGAG*CUACC

Length

10 nucleotides

Bulged bases

1VQN|1|0|G|1165

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQN_044 not in the Motif Atlas

Homologous match to IL_4V9F_043

Geometric discrepancy: 0.1259

The information below is about IL_4V9F_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30542.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

4

Unit IDs

1VQN|1|0|G|1163
1VQN|1|0|U|1164
1VQN|1|0|G|1165
1VQN|1|0|A|1166
1VQN|1|0|G|1167
*
1VQN|1|0|C|1179
1VQN|1|0|U|1180
1VQN|1|0|A|1181
1VQN|1|0|C|1182
1VQN|1|0|C|1183

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain I

50S RIBOSOMAL PROTEIN L11P