IL_1VQN_054

3D structure

PDB id

1VQN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CC-HPMN AND CCA-PHE-CAP-BIO bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CAGUGAAAG*CGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQN_054 not in the Motif Atlas

Homologous match to IL_4V9F_054

Geometric discrepancy: 0.1479

The information below is about IL_4V9F_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_41853.1

Basepair signature

cWW-L-tHH-L-tHS-L-cWW-L-L

Number of instances in this motif group

1

Unit IDs

1VQN|1|0|C|1521
1VQN|1|0|A|1522
1VQN|1|0|G|1523
1VQN|1|0|U|1524
1VQN|1|0|G|1525
1VQN|1|0|A|1526
1VQN|1|0|A|1527
1VQN|1|0|A|1528
1VQN|1|0|G|1529
*
1VQN|1|0|C|1662
1VQN|1|0|G|1663
1VQN|1|0|A|1664
1VQN|1|0|G|1665

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain A

50S ribosomal protein L2P