IL_1VQN_075

3D structure

PDB id

1VQN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CC-HPMN AND CCA-PHE-CAP-BIO bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

1VQN|1|0|A|2474

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQN_075 not in the Motif Atlas

Homologous match to IL_4V9F_075

Geometric discrepancy: 0.0477

The information below is about IL_4V9F_075

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

1VQN|1|0|G|2111
1VQN|1|0|A|2112
*
1VQN|1|0|U|2473
1VQN|1|0|A|2474
1VQN|1|0|C|2475
1VQN|1|0|C|2476

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain 5

5'-R(*CP*CP*AP*(PHE)*(ACA)*(BTN))-3'

Chain A

50S ribosomal protein L2P