IL_34520.3

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3	break		4		5	1-2	1-5	2-5	3-4
1	IL_9AXU_024	9AXU	0.3947	0		2	LSU rRNA	G	807	U	808	U	809	*	A	783	C	784	ncSH	cWW		cWW
2	IL_8GLP_254	8GLP	0.6212	0	Minor groove platform (H)	S2	SSU rRNA	C	1521	A	1522	C	1523	*	G	1235	G	1236		cWW		cWW
3	IL_8P9A_433	8P9A	0.5880	0	Minor groove platform	sR	SSU rRNA	C	1459	A	1460	C	1461	*	G	1178	G	1179		cWW		cWW
4	IL_8CRE_447	8CRE	0.3293	0	Minor groove platform	CM	SSU rRNA	C	1445	A	1446	C	1447	*	G	1163	G	1164		cWW		cWW
5	IL_8B0X_041	8B0X	0.6331	0		A	SSU rRNA	C	1226	A	1227	C	1228	*	G	953	G	954		cWW		cWW
6	IL_3IWN_001	3IWN	0.4330	0	Minor groove platform	A	Cyclic di-GMP-I riboswitch	G	89	A	90	U	91	*	A	2	C	3		ncWW		cWW
7	IL_3K0J_002	3K0J	0.4368	0	Minor groove platform related	E	TPP riboswitch (THI element)	C	18	C	19	U	20	*	A	35	G	36	ncSH	cWW		cWW
8	IL_7TZS_003	7TZS	0.3305	0	Minor groove platform related	X	TPP riboswitch (THI element)	C	23	C	24	U	25	*	A	35	G	36	ncSH	cWW		cWW
9	IL_9E6Q_055	9E6Q	0.3081	0		1	LSU rRNA	C	1499	A	1500	C	1501	*	G	1488	G	1489	cSH	cWW		cWW
10	IL_7A0S_003	7A0S	0.3691	0	Minor groove platform	X	LSU rRNA	U	447	C	448	C	449	*	G	42	A	43	cSH	cWW		cWW
11	IL_9E6Q_003	9E6Q	0.4051	0		1	LSU rRNA	G	466	U	467	C	468	*	G	35	C	36	cSH	cWW		cWW
12	IL_9DFE_348	9DFE	0.3933	0	Minor groove platform	1A	LSU rRNA	U	434	C	435	C	436	*	G	42	A	43	cSH	cWW		cWW
13	IL_8B0X_067	8B0X	0.3145	0	Minor groove platform (H)	a	LSU rRNA	U	434	C	435	C	436	*	G	43	A	44	cSH	cWW		cWW
14	IL_4R4V_001	4R4V	0.4069	0	Minor groove platform	A	VS ribozyme RNA	U	777	U	778	A	779	*	U	607	G	608		cWW		cWW
15	IL_8GLP_292	8GLP	0.3857	0	Minor groove platform (H)	L5	LSU rRNA	U	1790	U	1791	PSU	1792	*	A	1737	A	1738	cSH	cWW	tHS	cWW
16	IL_9E6Q_078	9E6Q	0.4699	1	Minor groove platform (H)	1	LSU rRNA	U	2552	C	2554	OMC	2555	*	G	2190	A	2191	cSH	cWW		cWW
17	IL_7A0S_076	7A0S	0.3825	1	Minor groove platform	X	LSU rRNA	U	2417	C	2419	C	2420	*	G	2053	A	2054	cSH	cWW		cWW
18	IL_8B0X_143	8B0X	0.4019	1		a	LSU rRNA	U	2442	C	2444	U	2445	*	A	2074	A	2075	cSH	cWW		cWW
19	IL_8P9A_322	8P9A	0.4263	1	Minor groove platform	AR	LSU rRNA	U	2807	C	2809	C	2810	*	G	2412	A	2413	cSH	cWW		cWW
20	IL_8GLP_131	8GLP	0.4383	1	Minor groove platform (H)	L5	LSU rRNA	U	4384	C	4386	C	4387	*	G	3916	A	3917	cSH	cWW		cWW
21	IL_9DFE_081	9DFE	0.4052	1	Minor groove platform	1A	LSU rRNA	U	2438	C	2440	C	2441	*	G	2070	A	2071	cSH	cWW		cWW
22	IL_4WF9_081	4WF9	0.4092	1	Minor groove platform	X	LSU rRNA	U	2465	C	2467	C	2468	*	G	2097	A	2098	cSH	cWW		cWW
23	IL_4V9F_075	4V9F	0.3853	1	Minor groove platform	0	LSU rRNA	U	2473	C	2475	C	2476	*	G	2111	A	2112	cSH	cWW		cWW
24	IL_9AXU_088	9AXU	0.3420	1	Minor groove platform (H)	2	LSU rRNA	U	2902	C	2904	C	2905	*	G	2500	A	2501	cSH	cWW		cWW
25	IL_8OI5_096	8OI5	0.3138	1	Minor groove platform (H)	1	LSU rRNA	U	2779	C	2781	C	2782	*	G	2390	A	2391	cSH	cWW		cWW
26	IL_7A0S_028	7A0S	0.2583	0	Minor groove platform	X	LSU rRNA	U	925	C	926	C	927	*	G	875	A	876	ncSH	cWW		cWW
27	IL_4V9F_034	4V9F	0.2310	0	Minor groove platform	0	LSU rRNA	U	1009	C	1010	C	1011	*	G	956	A	957	cSH	cWW		cWW
28	IL_4WF9_032	4WF9	0.2662	0	Minor groove platform	X	LSU rRNA	U	958	C	959	C	960	*	G	907	A	908	cSH	cWW		cWW
29	IL_9DFE_027	9DFE	0.2665	0	Minor groove platform	1A	LSU rRNA	U	913	C	914	C	915	*	G	862	A	863	cSH	cWW		cWW
30	IL_8OI5_017	8OI5	0.2665	1	Minor groove platform (H)	1	LSU rRNA	C	439	U	440	G	442	*	C	487	G	488	cSH	cWW	tHS	cWW
31	IL_4LFB_038	4LFB	0.2788	0	Minor groove platform	A	SSU rRNA	C	1226	A	1227	C	1228	*	G	953	G	954		cWW	ntHS	cWW
32	IL_1U6B_007	1U6B	0.3575	0	Minor groove platform	B	197-MER	G	128	A	129	G	130	*	C	177	C	178	cSH	cWW	tHS	cWW
33	IL_6DTD_003	6DTD	0.3052	0	Minor groove platform	C	RNA (37-MER)	G	22	A	23	A	24	*	U	15	C	16	cSH	cWW	tHS	cWW
34	IL_5ML7_009	5ML7	0.2872	0	Minor groove platform	B	23S ribosomal RNA	C	2177	A	2178	G	2179	*	C	2201	G	2202		cWW	tHS	cWW
35	IL_2QWY_009	2QWY	0.2358	0	Minor groove platform	C	SAM-II riboswitch	U	40	A	41	G	42	*	C	23	A	24		cWW	tHS	cWW
36	IL_9C75_001	9C75	0.2733	0	Minor groove platform	R	Rev Response Element	U	35	A	36	C	37	*	G	9	G	10		cWW	ntHS	cWW
37	IL_8B0X_063	8B0X	0.2648	0	Single bulged A (H)	A	SSU rRNA	U	1440	A	1441	G	1442	*	C	1460	G	1461		cWW		cWW
38	IL_5T83_003	5T83	0.1388	0	Minor groove platform	A	Guanidine-I riboswitch	C	36	U	37	G	38	*	C	21	G	22	ncSH	cWW	ntHS	cWW
39	IL_7MLW_004	7MLW	0.1111	0	Minor groove platform	F	Guanidine-I riboswitch	C	45	U	46	G	47	*	C	16	G	17	ncSH	cWW	tHS	cWW
40	IL_6DLR_003	6DLR	0.0000	0	Minor groove platform	A	Guanidine-I riboswitch	C	39	U	40	G	41	*	C	21	G	22	cSH	cWW	tHS	cWW
41	IL_8GLP_092	8GLP	0.1982	0		L5	LSU rRNA	A	2477	C	2478	G	2479	*	C	2499	U	2500		cWW		cWW
42	IL_8P9A_267	8P9A	0.1596	0	Minor groove platform	AR	LSU rRNA	U	1050	U	1051	U	1052	*	A	997	A	998	cSH	cWW	ntHS	cWW
43	IL_8OI5_042	8OI5	0.1177	0	Minor groove platform (H)	1	LSU rRNA	U	1046	U	1047	U	1048	*	A	993	A	994	ncSH	cWW	ntHS	cWW
44	IL_9AXU_038	9AXU	0.1478	0	Minor groove platform (H)	2	LSU rRNA	U	1082	U	1083	U	1084	*	A	1029	A	1030	ncSH	cWW	ntHS	cWW
45	IL_8GLP_200	8GLP	0.2242	0		S2	SSU rRNA	A	339	C	340	C	341	*	G	123	U	124		cWW		cWW
46	IL_8GLP_218	8GLP	0.3105	0		S2	SSU rRNA	A	545	G	546	G	547	*	C	537	U	538	cSH	cWW	ncWW	ncWW
47	IL_8CRE_419	8CRE	0.4554	0	Minor groove platform	CM	SSU rRNA	U	531	A	532	A	533	*	U	515	A	516		cWW	tHS	ncWW
48	IL_8P9A_443	8P9A	0.2902	0	Minor groove platform	sR	SSU rRNA	C	1306	U	1307	G	1308	*	C	1317	G	1318	cSH	cWW	tHS	cWW
49	IL_8GLP_263	8GLP	0.2613	0	Minor groove platform (H)	S2	SSU rRNA	C	1363	U	1364	G	1365	*	C	1374	G	1375	cSH	cWW	tHS	cWW
50	IL_8CRE_457	8CRE	0.2609	0	Minor groove platform	CM	SSU rRNA	C	1291	U	1292	G	1293	*	C	1302	G	1303	ncSW	cWW		cWW
51	IL_8CRE_394	8CRE	0.3571	0	Minor groove platform	CM	SSU rRNA	C	50	A	51	U	52	*	A	426	G	427		cWW	tHS	cWW
52	IL_8GLP_192	8GLP	0.3710	0	Minor groove platform (H)	S2	SSU rRNA	C	49	A	50	U	51	*	A	476	G	477		cWW	tHS	cWW
53	IL_8P9A_377	8P9A	0.4034	0	Minor groove platform	sR	SSU rRNA	C	50	A	51	U	52	*	A	428	G	429		cWW	tHS	cWW
54	IL_8B0X_004	8B0X	0.4294	0	Minor groove platform (H)	A	SSU rRNA	C	54	A	55	U	56	*	A	356	G	357		cWW	tHS	cWW
55	IL_4LFB_004	4LFB	0.4337	0	Minor groove platform	A	SSU rRNA	C	54	A	55	U	56	*	A	356	G	357		cWW	tHS	cWW
56	IL_4LFB_054	4LFB	0.4062	0	Minor groove platform	A	SSU rRNA	C	1260	A	1261	C	1262	*	G	1273	G	1274		ncWW	tHS	cWW
57	IL_4UYK_001	4UYK	0.3528	0	Minor groove platform	R	SRP RNA	C	122	A	123	C	124	*	G	77	G	78			tHS	cWW
58	IL_8CRE_420	8CRE	0.3074	0	Minor groove platform	CM	SSU rRNA	A	516	C	517	A	518	*	U	530	U	531		cWW		cWW
59	IL_8P9A_401	8P9A	0.3025	0	Minor groove platform	sR	SSU rRNA	A	518	C	519	A	520	*	U	532	U	533		cWW	ntHS	cWW
60	IL_8GLP_246	8GLP	0.3793	0		S2	SSU rRNA	G	1108	C	1109	G	1110	*	C	1123	C	1124		cWW	ntHS	cWW
61	IL_9DFE_031	9DFE	0.3800	0	Minor groove platform	1A	LSU rRNA	U	877	A	878	G	879	*	C	898	A	899		cWW		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CAC*GG	8
UACC*GA	8
UCC*GA	7
CUG*CG	6
CAU*AG	5
UUU*AA	3
CCU*AG	2
UAG*CA	2
ACA*UU	2
GUU*AC	1
GAU*AC	1
GUC*GC	1
UUA*UG	1
UU(PSU)*AA	1
UAC(OMC)*GA	1
UACU*AA	1
CUUG*CG	1
GAG*CC	1
GAA*UC	1
CAG*CG	1
UAC*GG	1
UAG*CG	1
ACG*CU	1
ACC*GU	1
AGG*CU	1
UAA*UA	1
GCG*CC	1

Non-Watson-Crick part of the motif

Sequence	Counts
A*	22
C*	14
U*	13
AC*	10
UU*	1
G*	1

Release history

Release	4.2
Date	2025-10-08
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_34520.3 Version IL_34520.3 of this group appears in releases 4.2 to 4.2 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_34520.3 Version IL_34520.3 of this group appears in releases 4.2 to 4.2

Download

Csv

Json