IL_1VQN_100

3D structure

PDB id

1VQN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CC-HPMN AND CCA-PHE-CAP-BIO bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GGUUGCCU*AUAAGC

Length

14 nucleotides

Bulged bases

1VQN|1|9|U|3023, 1VQN|1|9|U|3024

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQN_100 not in the Motif Atlas

Homologous match to IL_4V9F_102

Geometric discrepancy: 0.5646

The information below is about IL_4V9F_102

Detailed Annotation

Minor groove platform related

Broad Annotation

No text annotation

Motif group

IL_67623.1

Basepair signature

cWW-tSW-cSW-L-cSW-L-R-L-cWW-cWW

Number of instances in this motif group

1

Unit IDs

1VQN|1|9|G|3021
1VQN|1|9|G|3022
1VQN|1|9|U|3023
1VQN|1|9|U|3024
1VQN|1|9|G|3025
1VQN|1|9|C|3026
1VQN|1|9|C|3027
1VQN|1|9|U|3028
*
1VQN|1|9|A|3054
1VQN|1|9|U|3055
1VQN|1|9|A|3056
1VQN|1|9|A|3057
1VQN|1|9|G|3058
1VQN|1|9|C|3059

Current chains

Chain 9

5S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L5P

Chain N

50S ribosomal protein L18P