3D structure

PDB id
1VQO (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of CCPMN bound to the large ribosomal subunit haloarcula marismortui
Experimental method
X-RAY DIFFRACTION
Resolution
2.2 Å

Loop

Sequence
UUAGUAA*UGAACG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1VQO_007 not in the Motif Atlas
Homologous match to IL_4V9F_007
Geometric discrepancy: 0.0398
The information below is about IL_4V9F_007
Detailed Annotation
7x6 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_26307.2
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
9

Unit IDs

1VQO|1|0|U|210
1VQO|1|0|U|211
1VQO|1|0|A|212
1VQO|1|0|G|213
1VQO|1|0|U|214
1VQO|1|0|A|215
1VQO|1|0|A|216
*
1VQO|1|0|U|224
1VQO|1|0|G|225
1VQO|1|0|A|226
1VQO|1|0|A|227
1VQO|1|0|C|228
1VQO|1|0|G|229

Current chains

Chain 0
23S ribosomal rna

Nearby chains

Chain 3
50S ribosomal protein L44E
Chain L
50S ribosomal protein L15P
Chain M
50S Ribosomal Protein L15E

Coloring options:


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