Motif IL_02666.2 Version IL_02666.2 of this group appears in releases 4.7 to 4.7

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5		6		7	break		8		9		10		11		12		13	1-13	2-12	3-11	4-5	5-10	6-9	7-8
1	IL_4V9F_049	4V9F	0.1762	0	7x6 Sarcin-Ricin; G-bulge	0	LSU rRNA	A	1367	U	1368	A	1369	G	1370	U	1371	A	1372	G	1373	*	U	2052	G	2053	A	2054	A	2055	C	2056	U	2057	cWW	tSH	tHH	cSH	tWH	tHS	cWW
2	IL_9E6Q_051	9E6Q	0.1417	0	7x6 Sarcin-Ricin; G-bulge	1	LSU rRNA	G	1390	U	1391	A	1392	G	1393	U	1394	A	1395	G	1396	*	C	2132	G	2133	A	2134	A	2135	C	2136	C	2137	cWW	tSH	tHH	cSH	tWH	tHS	cWW
3	IL_8GLP_300	8GLP	0.0000	0	7x6 Sarcin-Ricin; G-bulge	L5	LSU rRNA	G	2358	U	2359	A	2360	G	2361	U	2362	A2M	2363	OMG	2364	*	C	3858	G	3859	A	3860	A	3861	A	3862	C	3863	cWW	tSH	tHH	cSH	tWH	tHS	cWW
4	IL_9H3G_064	9H3G	0.0463	0	7x6 Sarcin-Ricin; G-bulge	A	LSU rRNA	G	1453	U	1454	A	1455	G	1456	U	1457	A2M	1458	OMG	1459	*	C	2352	G	2353	A	2354	A	2355	A	2356	C	2357	cWW	tSH	tHH	cSH	tWH	tHS	cWW
5	IL_8P9A_289	8P9A	0.0726	0	7x6 Sarcin-Ricin; G-bulge	AR	LSU rRNA	G	1444	U	1445	A	1446	G	1447	U	1448	A	1449	G	1450	*	C	2354	G	2355	A	2356	A	2357	A	2358	C	2359	cWW	tSH	tHH	cSH	tWH	tHS	cWW
6	IL_8OI5_062	8OI5	0.0707	0	7x6 Sarcin-Ricin; G-bulge	1	LSU rRNA	G	1440	U	1441	A	1442	G	1443	U	1444	A	1445	G	1446	*	C	2332	G	2333	A	2334	A	2335	A	2336	C	2337	cWW	tSH	tHH	cSH	tWH	tHS	cWW
7	IL_9AXU_057	9AXU	0.0760	0	7x6 Sarcin-Ricin; G-bulge	2	LSU rRNA	G	1478	A	1479	A	1480	G	1481	U	1482	A	1483	G	1484	*	C	2442	G	2443	A	2444	A	2445	A	2446	C	2447	cWW	tSH	tHH	cSH	tWH	tHS	cWW
8	IL_9E6Q_022	9E6Q	0.1697	0	7x6 Sarcin-Ricin; G-bulge	1	LSU rRNA	G	610	G	611	A	612	G	613	U	614	A	615	C	616	*	G	592	G	593	A	594	A	595	A	596	C	597	cWW	tSH	tHH	cSH	tWH	tHS	cWW
9	IL_4V9F_092	4V9F	0.1547	0	Sarcin-Ricin target in LSU H95; G-bulge	0	LSU rRNA	A	2689	U	2690	A	2691	G	2692	U	2693	A	2694	C	2695	*	G	2700	G	2701	A	2702	A	2703	C	2704	U	2705	cWW	tSH	tHH	cSH	tWH	tHS	cWW
10	IL_9E6Q_094	9E6Q	0.1434	0	Sarcin-Ricin target in LSU H95; G-bulge	1	LSU rRNA	U	2767	C	2768	A	2769	G	2770	U	2771	A	2772	C	2773	*	G	2778	G	2779	A	2780	A	2781	C	2782	G	2783	cWW	tSH	tHH	cSH	tWH	tHS	cWW
11	IL_9E6Q_006	9E6Q	0.1629	0	7x6 Sarcin-Ricin; G-bulge	1	LSU rRNA	U	183	U	184	A	185	G	186	U	187	A	188	C	189	*	G	169	G	170	A	171	A	172	A	173	G	174	cWW	tSH	tHH	cSH	tWH	tHS	cWW
12	IL_9DFE_007	9DFE	0.1542	0	7x6 Sarcin-Ricin; G-bulge	1A	LSU rRNA	U	239	G	240	A	241	G	242	U	243	A	244	G	245	*	C	253	G	254	A	255	A	256	A	257	G	258	cWW	tSH	tHH	cSH	tWH	tHS	cWW
13	IL_9E6Q_007	9E6Q	0.1742	0	7x6 Sarcin-Ricin; G-bulge	1	LSU rRNA	U	220	G	221	A	222	G	223	U	224	A	225	G	226	*	C	234	G	235	A	236	A	237	A	238	G	239	cWW	tSH	tHH	cSH	tWH	tHS	cWW
14	IL_4V9F_007	4V9F	0.1677	0	7x6 Sarcin-Ricin; G-bulge	0	LSU rRNA	U	210	U	211	A	212	G	213	U	214	A	215	A	216	*	U	224	G	225	A	226	A	227	C	228	G	229	cWW	tSH	tHH	cSH	tWH	tHS	cWW
15	IL_8B0X_071	8B0X	0.1572	0	7x6 Sarcin-Ricin; G-bulge	a	LSU rRNA	C	239	C	240	A	241	G	242	U	243	A	244	G	245	*	C	253	G	254	A	255	A	256	C	257	G	258	cWW	tSH	tHH	cSH	tWH	tHS	cWW
16	IL_9E6Q_110	9E6Q	0.1799	0	7x6 Sarcin-Ricin; G-bulge	2	5S rRNA	G	79	G	80	A	81	G	82	U	83	A	84	C	85	*	G	105	G	106	A	107	A	108	A	109	C	110	cWW	tSH	tHH	cSH	tWH	tHS	cWW
17	IL_4V9F_106	4V9F	0.2138	0	7x6 Sarcin-Ricin; G-bulge	9	5S rRNA	G	75	G	76	A	77	G	78	U	79	A	80	C	81	*	G	101	G	102	A	103	A	104	A	105	U	106	ncWW	tSH	tHH	cSH	tWH	tHS	cWW
18	IL_1NBS_007	1NBS	0.1957	0	7x6 Sarcin-Ricin; G-bulge	B	RNase P class B	U	165	G	166	A	167	G	168	U	169	A	170	U	171	*	A	138	A	139	A	140	A	141	A	142	A	143	cWW	ntSH	tHH	cSH	ntWH	tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GUAGU(A2M)(OMG)*CGAAAC	2
GUAGUAG*CGAAAC	2
GGAGUAC*GGAAAC	2
UGAGUAG*CGAAAG	2
AUAGUAG*UGAACU	1
GUAGUAG*CGAACC	1
GAAGUAG*CGAAAC	1
AUAGUAC*GGAACU	1
UCAGUAC*GGAACG	1
UUAGUAC*GGAAAG	1
UUAGUAA*UGAACG	1
CCAGUAG*CGAACG	1
GGAGUAC*GGAAAU	1
UGAGUAU*AAAAAA	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAGUA*GAAA	5
UAGUA*GAAC	4
UAGUA*GAAA	3
UAGU(A2M)*GAAA	2
CAGUA*GAAC	2
AAGUA*GAAA	1
GAGUA*AAAA	1

Release history

Release	4.7
Date	2026-02-25
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: 7x6 Sarcin-Ricin; G-bulge (16)
Sarcin-Ricin target in LSU H95; G-bulge (2)
Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-cWW
Heat map statistics: Min 0.05 | Avg 0.17 | Max 0.26

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Coloring options: Nucleotide numbers

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