3D structure

PDB id
1VQO (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of CCPMN bound to the large ribosomal subunit haloarcula marismortui
Experimental method
X-RAY DIFFRACTION
Resolution
2.2 Å

Loop

Sequence
CCGACCG*CCAGUACG
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1VQO_013 not in the Motif Atlas
Homologous match to IL_4V9F_012
Geometric discrepancy: 0.065
The information below is about IL_4V9F_012
Detailed Annotation
8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_59724.1
Basepair signature
cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW
Number of instances in this motif group
1

Unit IDs

1VQO|1|0|C|290
1VQO|1|0|C|291
1VQO|1|0|G|292
1VQO|1|0|A|293
1VQO|1|0|C|294
1VQO|1|0|C|295
1VQO|1|0|G|296
*
1VQO|1|0|C|355
1VQO|1|0|C|356
1VQO|1|0|A|357
1VQO|1|0|G|358
1VQO|1|0|U|359
1VQO|1|0|A|360
1VQO|1|0|C|361
1VQO|1|0|G|362

Current chains

Chain 0
23S ribosomal rna

Nearby chains

No other chains within 10Å

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1078 s