IL_1VQO_013

3D structure

PDB id

1VQO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCPMN bound to the large ribosomal subunit haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.2 Å

Loop

Sequence

CCGACCG*CCAGUACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQO_013 not in the Motif Atlas

Homologous match to IL_4V9F_012

Geometric discrepancy: 0.065

The information below is about IL_4V9F_012

Detailed Annotation

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_59724.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

Number of instances in this motif group

1

Unit IDs

1VQO|1|0|C|290
1VQO|1|0|C|291
1VQO|1|0|G|292
1VQO|1|0|A|293
1VQO|1|0|C|294
1VQO|1|0|C|295
1VQO|1|0|G|296
*
1VQO|1|0|C|355
1VQO|1|0|C|356
1VQO|1|0|A|357
1VQO|1|0|G|358
1VQO|1|0|U|359
1VQO|1|0|A|360
1VQO|1|0|C|361
1VQO|1|0|G|362

Current chains

Chain 0

23S ribosomal rna

Nearby chains