IL_1VQO_013
3D structure
- PDB id
- 1VQO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of CCPMN bound to the large ribosomal subunit haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.2 Å
Loop
- Sequence
- CCGACCG*CCAGUACG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VQO_013 not in the Motif Atlas
- Homologous match to IL_4V9F_012
- Geometric discrepancy: 0.065
- The information below is about IL_4V9F_012
- Detailed Annotation
- 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_59724.1
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
1VQO|1|0|C|290
1VQO|1|0|C|291
1VQO|1|0|G|292
1VQO|1|0|A|293
1VQO|1|0|C|294
1VQO|1|0|C|295
1VQO|1|0|G|296
*
1VQO|1|0|C|355
1VQO|1|0|C|356
1VQO|1|0|A|357
1VQO|1|0|G|358
1VQO|1|0|U|359
1VQO|1|0|A|360
1VQO|1|0|C|361
1VQO|1|0|G|362
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
No other chains within 10ÅColoring options: