3D structure

PDB id
1VQO (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of CCPMN bound to the large ribosomal subunit haloarcula marismortui
Experimental method
X-RAY DIFFRACTION
Resolution
2.2 Å

Loop

Sequence
GGUAG*CAAAC
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1VQO_034 not in the Motif Atlas
Geometric match to IL_4V9F_033
Geometric discrepancy: 0.0353
The information below is about IL_4V9F_033
Detailed Annotation
5x5 Sarcin-Ricin with intercalated A; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_38862.4
Basepair signature
cWW-cSH-R-tWH-tHS-cWW
Number of instances in this motif group
5

Unit IDs

1VQO|1|0|G|952
1VQO|1|0|G|953
1VQO|1|0|U|954
1VQO|1|0|A|955
1VQO|1|0|G|956
*
1VQO|1|0|C|1011
1VQO|1|0|A|1012
1VQO|1|0|A|1013
1VQO|1|0|A|1014
1VQO|1|0|C|1015

Current chains

Chain 0
23S ribosomal rna

Nearby chains

Chain 9
5S ribosomal RNA; 5S rRNA
Chain H
50S RIBOSOMAL PROTEIN L10E
Chain N
50S ribosomal protein L18P
Chain Q
50S ribosomal protein L21e
Chain W
50S ribosomal protein L30P

Coloring options:


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