IL_1VQO_071

3D structure

PDB id

1VQO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCPMN bound to the large ribosomal subunit haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.2 Å

Loop

Sequence

CGUAGUACCUUG*CUUG

Length

16 nucleotides

Bulged bases

1VQO|1|0|G|1979, 1VQO|1|0|U|1985, 1VQO|1|0|U|2004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQO_071 not in the Motif Atlas

Homologous match to IL_4V9F_071

Geometric discrepancy: 0.0598

The information below is about IL_4V9F_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

1VQO|1|0|C|1975
1VQO|1|0|G|1976
1VQO|1|0|U|1977
1VQO|1|0|A|1978
1VQO|1|0|G|1979
1VQO|1|0|U|1980
1VQO|1|0|A|1981
1VQO|1|0|C|1982
1VQO|1|0|C|1983
1VQO|1|0|U|1984
1VQO|1|0|U|1985
1VQO|1|0|G|1986
*
1VQO|1|0|C|2002
1VQO|1|0|U|2003
1VQO|1|0|U|2004
1VQO|1|0|G|2005

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain 4

5'-R(*CP*CP*(PPU))-3'