IL_1VQP_019
3D structure
- PDB id
- 1VQP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the transition state analogue 'RAP' bound to the large ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.25 Å
Loop
- Sequence
- ACGAAU*AGACU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VQP_019 not in the Motif Atlas
- Homologous match to IL_4V9F_018
- Geometric discrepancy: 0.0719
- The information below is about IL_4V9F_018
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_97631.1
- Basepair signature
- cWW-L-R-L-R-L-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
1VQP|1|0|A|562
1VQP|1|0|C|563
1VQP|1|0|G|564
1VQP|1|0|A|565
1VQP|1|0|A|566
1VQP|1|0|U|567
*
1VQP|1|0|A|591
1VQP|1|0|G|592
1VQP|1|0|A|593
1VQP|1|0|C|594
1VQP|1|0|U|595
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain W
- 50S ribosomal protein L30P
- Chain Y
- 50S ribosomal protein L32E
Coloring options: