IL_1VQP_034
3D structure
- PDB id
- 1VQP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the transition state analogue 'RAP' bound to the large ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.25 Å
Loop
- Sequence
- GGUAG*CAAAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VQP_034 not in the Motif Atlas
- Homologous match to IL_4V9F_033
- Geometric discrepancy: 0.033
- The information below is about IL_4V9F_033
- Detailed Annotation
- 5x5 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_38862.4
- Basepair signature
- cWW-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
1VQP|1|0|G|952
1VQP|1|0|G|953
1VQP|1|0|U|954
1VQP|1|0|A|955
1VQP|1|0|G|956
*
1VQP|1|0|C|1011
1VQP|1|0|A|1012
1VQP|1|0|A|1013
1VQP|1|0|A|1014
1VQP|1|0|C|1015
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain 9
- 5S ribosomal RNA; 5S rRNA
- Chain H
- 50S RIBOSOMAL PROTEIN L10E
- Chain N
- 50S ribosomal protein L18P
- Chain Q
- 50S ribosomal protein L21e
- Chain W
- 50S ribosomal protein L30P
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