IL_1VQP_041

3D structure

PDB id

1VQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'RAP' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.25 Å

Loop

Sequence

UUAAGUG*CUCAAA

Length

13 nucleotides

Bulged bases

1VQP|1|0|C|1245, 1VQP|1|0|A|1247

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQP_041 not in the Motif Atlas

Homologous match to IL_4V9F_040

Geometric discrepancy: 0.1427

The information below is about IL_4V9F_040

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

1VQP|1|0|U|1115
1VQP|1|0|U|1116
1VQP|1|0|A|1117
1VQP|1|0|A|1118
1VQP|1|0|G|1119
1VQP|1|0|U|1120
1VQP|1|0|G|1121
*
1VQP|1|0|C|1243
1VQP|1|0|U|1244
1VQP|1|0|C|1245
1VQP|1|0|A|1246
1VQP|1|0|A|1247
1VQP|1|0|A|1248

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain E

50S ribosomal protein L6P

Chain J

50S ribosomal protein L13P